STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000010695SUMO specific peptidase 3b. (556 aa)    
Predicted Functional Partners:
tex10
Testis expressed 10.
    
 0.950
ENSCHAP00000058412
Proline, glutamate and leucine rich protein 1.
    
 0.947
chd8
Chromodomain helicase DNA binding protein 8.
    
  0.935
ENSCHAP00000056195
WD repeat domain 18.
    
 0.899
ENSCHAP00000058207
WD repeat domain 5.
   
 0.877
sumo1
Small ubiquitin like modifier 1.
   
 0.875
las1l
LAS1 like ribosome biogenesis factor.
   
 0.873
crebzf
CREB/ATF bZIP transcription factor.
   
 0.873
ENSCHAP00000004284
Retinoblastoma binding protein 5.
   
 0.872
rnf2
Ring finger protein 2.
   
  0.858
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.