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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc35e3Solute carrier family 35 member E3. (313 aa)    
Predicted Functional Partners:
rassf5
Ras association domain family member 5.
     
 0.804
ENSCHAP00000010851
MDM2 proto-oncogene.
 
   
 0.794
ENSCHAP00000026295
Zgc:193812.
   
    0.747
ENSCHAP00000014546
Nucleoporin 107.
 
    
 0.701
ENSCHAP00000003889
MDM4 regulator of p53.
 
   
  0.616
FBXW11
F-box and WD repeat domain containing 11.
   
 
  0.599
LOC105893085
F-box/WD repeat-containing protein 11-like.
   
 
  0.599
ENSCHAP00000062650
Cyclin-dependent kinase inhibitor 2A/B (p15, inhibits CDK4).
    
  0.598
slc35c1
Solute carrier family 35 member C1.
      
 0.538
slc35b2
Solute carrier family 35 member B2.
    
 
 0.532
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.