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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TYMPThymidine phosphorylase. (457 aa)    
Predicted Functional Partners:
dera
Deoxyribose-phosphate aldolase.
 
 0.973
helb
DNA helicase B.
  
 0.966
ENSCHAP00000019571
Uridine phosphorylase 1.
  
 
 0.958
UPRT
Uracil phosphoribosyltransferase homolog.
  
 
 0.956
LOC105893239
Uracil phosphoribosyltransferase homolog.
  
 
 0.956
aprt
Adenine phosphoribosyltransferase.
    
 0.946
ENSCHAP00000060338
Uridine phosphorylase 2.
  
 
 0.945
ENSCHAP00000060350
Uridine phosphorylase 2.
  
 
 0.945
ENSCHAP00000022743
Cytidine deaminase b.
 
 
 0.943
ENSCHAP00000041850
Thymidine kinase 1, soluble.
    
 0.943
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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