STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000010943Sorting nexin 29. (887 aa)    
Predicted Functional Partners:
ENSCHAP00000022390
annotation not available
   
 
  0.847
ENSCHAP00000022541
annotation not available
   
 
  0.847
ENSCHAP00000037967
UV radiation resistance associated gene.
    
 0.834
vps45
Vacuolar protein sorting 45 homolog.
     
 0.593
ENSCHAP00000046945
Sorting nexin family member 21.
   
 0.583
ENSCHAP00000057597
Sorting nexin 15.
   
 0.578
plekhf2
Pleckstrin homology and FYVE domain containing 2.
    
 
 0.553
ENSCHAP00000006066
Phosphatidylinositol 3-kinase, catalytic subunit type 3.
    
 
 0.530
becn1
Beclin 1.
    
 
 0.525
ENSCHAP00000028386
Thioredoxin domain containing 11.
      
 0.518
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.