STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ube2d3Ubiquitin conjugating enzyme E2 D3. (163 aa)    
Predicted Functional Partners:
ENSCHAP00000000456
annotation not available
   
 0.999
trip12
Thyroid hormone receptor interactor 12.
   
 0.974
ENSCHAP00000030291
Ubiquitin B.
   
 0.958
anapc11
Anaphase promoting complex subunit 11.
    
 0.943
rps27a
Ribosomal protein S27a.
   
 0.940
stub1
STIP1 homology and U-box containing protein 1.
   
 0.934
ENSCHAP00000007633
OTU deubiquitinase, ubiquitin aldehyde binding 1b.
    
 0.932
rbx1
Ring-box 1.
   
 0.931
ENSCHAP00000054339
annotation not available
    
 0.913
pex12
Peroxisomal biogenesis factor 12.
    
 0.881
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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