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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000011007Afadin, adherens junction formation factor a. (1848 aa)    
Predicted Functional Partners:
ENSCHAP00000055385
PVR cell adhesion molecule related 2 like.
    
 0.975
ENSCHAP00000024546
Tight junction protein 2a (zona occludens 2).
   
 0.964
ENSCHAP00000000886
Tight junction protein 1b.
   
 0.960
ENSCHAP00000036405
Tight junction protein 1a.
   
 0.960
ENSCHAP00000057702
annotation not available
   
 0.959
ENSCHAP00000023781
annotation not available
    
 0.954
ENSCHAP00000035322
Nectin cell adhesion molecule 3b.
    
 0.954
nectin1
Nectin cell adhesion molecule 1.
    
 0.954
LOC105901888
Ras-related protein Rap-1A-like.
    
 0.948
rap1b
RAP1B, member of RAS oncogene family.
    
 0.941
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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