STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS36Vacuolar protein sorting 36 homolog. (341 aa)    
Predicted Functional Partners:
vps25
Vacuolar protein sorting 25 homolog.
   
 0.995
vps28
VPS28 subunit of ESCRT-I.
    
 0.993
LOC105900785
Ubiquitin-conjugating enzyme E2 variant 3-like.
    
 0.979
tm9sf1
Transmembrane 9 superfamily member 1.
    
 0.979
rps27a
Ribosomal protein S27a.
    
 0.971
LOC105898699
Charged multivesicular body protein 6-like.
 
  
 0.967
chmp6
Charged multivesicular body protein 6.
 
  
 0.966
ENSCHAP00000030857
annotation not available
    
 0.953
ENSCHAP00000030291
Ubiquitin B.
    
  0.950
LOC105898690
Chromosome unknown open reading frame, human C17orf75.
    
 0.944
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.