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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105894852Uncharacterized LOC105894852. (236 aa)    
Predicted Functional Partners:
noc2l
NOC2 like nucleolar associated transcriptional repressor.
   
 
 0.958
ENSCHAP00000051587
WD repeat domain 36.
   
 
 0.939
LOC105902840
Periodic tryptophan protein 2 homolog.
   
 
 0.933
ddx56
DEAD-box helicase 56.
   
 
 0.919
pdcd11
Programmed cell death 11.
   
 
 0.912
UTP18
UTP18 small subunit processome component.
   
 
 0.912
aamp
Angio associated migratory cell protein.
   
  
 0.910
bysl
Bystin like.
   
  
 0.910
ENSCHAP00000025631
BOP1 ribosomal biogenesis factor.
   
 
 0.909
ENSCHAP00000027188
Centrosomal protein 152.
   
 
 0.909
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.