Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000011185annotation not available (220 aa)    
Predicted Functional Partners:
ENSCHAP00000036037
Tonsoku-like, DNA repair protein.
    
 
 0.960
ENSCHAP00000012069
MMS22-like, DNA repair protein.
 
     0.942
ASF1B
Anti-silencing function 1B histone chaperone.
   
 
 0.890
ENSCHAP00000001573
Structure specific recognition protein 1a.
    
   0.811
ENSCHAP00000005122
Structure specific recognition protein 1a.
    
   0.811
ENSCHAP00000057485
Structure specific recognition protein 1b.
    
   0.811
supt16h
SPT16 homolog, facilitates chromatin remodeling subunit.
    
 
 0.794
ENSCHAP00000062146
BRCA1 associated RING domain 1.
   
 
 0.782
ENSCHAP00000045149
Minichromosome maintenance complex component 6.
   
 
 0.774
ENSCHAP00000006565
annotation not available
   
 
 0.772
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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