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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000011407Rab9 effector protein with kelch motifs. (350 aa)    
Predicted Functional Partners:
vamp3
Vesicle associated membrane protein 3.
     
 0.868
timm21
Translocase of inner mitochondrial membrane 21.
   
    0.750
ENSCHAP00000032071
RAB9B, member RAS oncogene family.
    
 0.701
LOC105902834
Ras-related protein Rab-9A-like.
    
 0.701
RAB9A
RAB9A, member RAS oncogene family.
    
 0.701
ENSCHAP00000018534
N-ethylmaleimide-sensitive factor a.
    
  0.694
ENSCHAP00000041189
N-ethylmaleimide-sensitive factor b.
    
  0.694
ENSCHAP00000004468
Cullin 2.
    
 0.688
plin1
Perilipin 1.
    
  0.687
ENSCHAP00000056057
Perilipin 2.
    
  0.687
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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