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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105912510Protein tyrosine phosphatase type IVA 2. (174 aa)    
Predicted Functional Partners:
rabggtb
Rab geranylgeranyltransferase subunit beta.
    
 0.775
ENSCHAP00000012123
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
     
 0.767
ENSCHAP00000008852
Serine peptidase inhibitor, Kazal type 2, tandem duplicate 3.
   
    0.707
taf6
TATA-box binding protein associated factor 6.
     
 0.674
taf6l
TATA-box binding protein associated factor 6 like.
     
 0.632
LOC105893872
Metal transporter CNNM4-like.
    
 
 0.614
CNNM1
Cyclin and CBS domain divalent metal cation transport mediator 1.
    
 
 0.614
ENSCHAP00000029116
Cyclin and CBS domain divalent metal cation transport mediator 2b.
    
 
 0.614
CNNM3
Cyclin and CBS domain divalent metal cation transport mediator 3.
    
 
 0.614
ENSCHAP00000029628
Cyclin and CBS domain divalent metal cation transport mediator 4a.
    
 
 0.614
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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