STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000011649Small integral membrane protein 29. (83 aa)    
Predicted Functional Partners:
pam16
Presequence translocase associated motor 16.
   
 0.981
ENSCHAP00000023152
Heat shock protein 9.
    
 0.956
ENSCHAP00000044087
Translocase of inner mitochondrial membrane 44 homolog (yeast).
    
 0.929
timm21
Translocase of inner mitochondrial membrane 21.
   
 0.901
timm50
Translocase of inner mitochondrial membrane 50.
   
 0.895
ENSCHAP00000016604
Translocase of inner mitochondrial membrane 23 homolog b (yeast).
   
 0.889
timm23
Translocase of inner mitochondrial membrane 23.
   
 0.889
timm17a
Translocase of inner mitochondrial membrane 17A.
   
 0.873
timm17b
Translocase of inner mitochondrial membrane 17B.
   
 0.873
grpel1
GrpE like 1, mitochondrial.
   
 0.857
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.