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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105891742Deoxyribonuclease-2-alpha-like. (380 aa)    
Predicted Functional Partners:
ENSCHAP00000009106
Adaptor related protein complex 1 subunit gamma 2.
     
 0.672
ENSCHAP00000025886
Glucosamine (N-acetyl)-6-sulfatase a.
   
 0.665
ENSCHAP00000028883
Glucosamine (N-acetyl)-6-sulfatase (Sanfilippo disease IIID), b.
   
 0.665
ctsz
Cathepsin Z.
   
 
 0.655
ENSCHAP00000021749
annotation not available
   
 
 0.655
ENSCHAP00000037010
Adaptor related protein complex 4 subunit epsilon 1.
     
 0.644
dnajc10
DnaJ heat shock protein family (Hsp40) member C10.
   
  0.595
ENSCHAP00000021622
Cathepsin C.
   
 
 0.576
ENSCHAP00000015866
Vesicle-associated membrane protein 8 (endobrevin).
     
 0.564
ENSCHAP00000015878
Vesicle-associated membrane protein 8 (endobrevin).
     
 0.564
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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