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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000011707Solute carrier family 47 member 4. (582 aa)    
Predicted Functional Partners:
hsd17b10
Hydroxysteroid 17-beta dehydrogenase 10.
    
 0.928
ENSCHAP00000003903
tRNA methyltransferase 10B.
   
 0.857
ENSCHAP00000046841
tRNA methyltransferase 10C, mitochondrial RNase P subunit.
   
 0.857
ENSCHAP00000004017
Farnesyl-diphosphate farnesyltransferase 1.
   
 
 0.807
POP1
POP1 homolog, ribonuclease P/MRP subunit.
   
 
 0.764
pop5
POP5 homolog, ribonuclease P/MRP subunit.
     
 0.763
ENSCHAP00000053314
Ribonuclease P 21 subunit.
    
 0.753
pdcd11
Programmed cell death 11.
  
    0.731
rpp30
Ribonuclease P/MRP subunit p30.
   
 
 0.716
pop4
POP4 homolog, ribonuclease P/MRP subunit.
     
 0.696
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.