STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmem160Transmembrane protein 160. (220 aa)    
Predicted Functional Partners:
ENSCHAP00000022391
Papilin b, proteoglycan-like sulfated glycoprotein.
      
 0.569
TRAPPC5
Trafficking protein particle complex 5.
   
    0.565
ENSCHAP00000020721
Mitochondrial ribosomal protein L41.
   
    0.563
sac3d1
SAC3 domain containing 1.
      
 0.544
ENSCHAP00000018384
LIM domain containing 2.
      
 0.416
tmem256
Transmembrane protein 256.
   
  
 0.414
ENSCHAP00000039581
Papilin a, proteoglycan-like sulfated glycoprotein.
      
 0.410
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.