STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000011722annotation not available (236 aa)    
Predicted Functional Partners:
ENSCHAP00000057487
SUMO specific peptidase 7b.
 
      0.859
sumo1
Small ubiquitin like modifier 1.
    
 0.831
ENSCHAP00000010783
annotation not available
    
 0.817
senp2
SUMO specific peptidase 2.
    
 0.812
ENSCHAP00000059740
Si:dkey-21c19.3.
    
 0.812
ENSCHAP00000018131
Small ubiquitin like modifier 2b.
    
 0.809
LOC105901964
Small ubiquitin-related modifier 2-like.
    
 0.809
ENSCHAP00000051067
Small ubiquitin like modifier 3a.
    
 0.809
SUMO1
Small ubiquitin-related modifier 1-like.
    
 0.783
tex10
Testis expressed 10.
    
 0.763
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.