STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nudt3Nudix hydrolase 3. (170 aa)    
Predicted Functional Partners:
ENSCHAP00000036655
Nudix (nucleoside diphosphate linked moiety X)-type motif 12.
   
 0.888
ENSCHAP00000049610
annotation not available
  
 
 0.888
ENSCHAP00000058691
NME/NM23 family member 8.
  
 
 0.888
ppil6
Peptidylprolyl isomerase like 6.
  
 0.878
ENSCHAP00000032778
Enhancer of mRNA decapping 4.
    
 0.870
ENSCHAP00000032945
5'-3' exoribonuclease 1.
   
 0.861
ENSCHAP00000019698
Decapping mRNA 1B.
    
 0.860
dcp1a
Decapping mRNA 1A.
    
 0.860
ENSCHAP00000031569
Transient receptor potential cation channel, subfamily M, member 2.
    
 0.847
ENSCHAP00000012583
PAT1 homolog 2.
    
 0.835
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.