ENSCHAP00000011728 protein (Clupea harengus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCHAP00000011728

Oxysterol binding protein-like 1A. (689 aa)

Predicted Functional Partners:

RAB7A

0.829

LOC105890731

0.829

mospd2

0.737

rilp

0.642

ENSCHAP00000042475

0.588

RILPL1

0.588

ENSCHAP00000000917

0.550

VAPA

0.550

VAPB

0.500

CRACR2A

0.411

Your Current Organism:

Clupea harengus

NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRACR2A	ENSCHAP00000011728	ENSCHAP00000000987	ENSCHAP00000011728	Calcium release activated channel regulator 2A.	Oxysterol binding protein-like 1A.	0.411
CRACR2A	ENSCHAP00000042475	ENSCHAP00000000987	ENSCHAP00000042475	Calcium release activated channel regulator 2A.	annotation not available	0.618
CRACR2A	RILPL1	ENSCHAP00000000987	ENSCHAP00000049639	Calcium release activated channel regulator 2A.	Rab interacting lysosomal protein like 1.	0.618
CRACR2A	rilp	ENSCHAP00000000987	ENSCHAP00000030643	Calcium release activated channel regulator 2A.	Rab interacting lysosomal protein.	0.550
ENSCHAP00000000917	ENSCHAP00000011728	ENSCHAP00000000917	ENSCHAP00000011728	VAMP (vesicle-associated membrane protein)-associated protein A, like.	Oxysterol binding protein-like 1A.	0.550
ENSCHAP00000000917	mospd2	ENSCHAP00000000917	ENSCHAP00000061487	VAMP (vesicle-associated membrane protein)-associated protein A, like.	Motile sperm domain containing 2.	0.503
ENSCHAP00000011728	CRACR2A	ENSCHAP00000011728	ENSCHAP00000000987	Oxysterol binding protein-like 1A.	Calcium release activated channel regulator 2A.	0.411
ENSCHAP00000011728	ENSCHAP00000000917	ENSCHAP00000011728	ENSCHAP00000000917	Oxysterol binding protein-like 1A.	VAMP (vesicle-associated membrane protein)-associated protein A, like.	0.550
ENSCHAP00000011728	ENSCHAP00000042475	ENSCHAP00000011728	ENSCHAP00000042475	Oxysterol binding protein-like 1A.	annotation not available	0.588
ENSCHAP00000011728	LOC105890731	ENSCHAP00000011728	ENSCHAP00000047181	Oxysterol binding protein-like 1A.	Ras-related protein Rab-7a-like.	0.829
ENSCHAP00000011728	RAB7A	ENSCHAP00000011728	ENSCHAP00000002082	Oxysterol binding protein-like 1A.	Ras-related protein Rab-7a-like.	0.829
ENSCHAP00000011728	RILPL1	ENSCHAP00000011728	ENSCHAP00000049639	Oxysterol binding protein-like 1A.	Rab interacting lysosomal protein like 1.	0.588
ENSCHAP00000011728	VAPA	ENSCHAP00000011728	ENSCHAP00000061296	Oxysterol binding protein-like 1A.	VAMP associated protein A.	0.550
ENSCHAP00000011728	VAPB	ENSCHAP00000011728	ENSCHAP00000059438	Oxysterol binding protein-like 1A.	VAMP associated protein B and C.	0.500
ENSCHAP00000011728	mospd2	ENSCHAP00000011728	ENSCHAP00000061487	Oxysterol binding protein-like 1A.	Motile sperm domain containing 2.	0.737
ENSCHAP00000011728	rilp	ENSCHAP00000011728	ENSCHAP00000030643	Oxysterol binding protein-like 1A.	Rab interacting lysosomal protein.	0.642
ENSCHAP00000042475	CRACR2A	ENSCHAP00000042475	ENSCHAP00000000987	annotation not available	Calcium release activated channel regulator 2A.	0.618
ENSCHAP00000042475	ENSCHAP00000011728	ENSCHAP00000042475	ENSCHAP00000011728	annotation not available	Oxysterol binding protein-like 1A.	0.588
ENSCHAP00000042475	LOC105890731	ENSCHAP00000042475	ENSCHAP00000047181	annotation not available	Ras-related protein Rab-7a-like.	0.620
ENSCHAP00000042475	RAB7A	ENSCHAP00000042475	ENSCHAP00000002082	annotation not available	Ras-related protein Rab-7a-like.	0.620