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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000011752F-box and WD repeat domain containing 9. (630 aa)    
Predicted Functional Partners:
rbx1
Ring-box 1.
    
 0.949
SKP1
S-phase kinase-associated protein 1-like.
    
 0.901
ENSCHAP00000052411
S-phase kinase-associated protein 1.
    
 0.901
CUL1
Cullin 1.
    
 0.859
LOC105907046
Cullin-1.
    
 0.859
ENSCHAP00000030291
Ubiquitin B.
    
 0.845
ENSCHAP00000027667
Cullin 3a.
    
 0.837
ENSCHAP00000044277
Cell division cycle 6 homolog (S. cerevisiae).
    
 0.826
ENSCHAP00000046631
Cell division cycle 6 homolog (S. cerevisiae).
    
 0.826
mrpl2
Mitochondrial ribosomal protein L2.
    
 0.810
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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