STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000011806Intraflagellar transport 172. (1749 aa)    
Predicted Functional Partners:
ENSCHAP00000004032
annotation not available
   
 0.993
ift80
Intraflagellar transport 80.
   
0.989
ENSCHAP00000045550
Fleer.
   
 0.988
ENSCHAP00000010071
Intraflagellar transport 88 homolog.
   
 0.987
ENSCHAP00000024700
Clusterin associated protein 1.
    
 0.986
ENSCHAP00000033353
TNF receptor-associated factor 3 interacting protein 1.
    
 0.986
ift81
Intraflagellar transport 81.
    
 0.986
ift46
Intraflagellar transport 46.
   
 0.982
ENSCHAP00000060760
Intraflagellar transport 52 homolog (Chlamydomonas).
    
 0.981
chdh
Choline dehydrogenase.
    
 0.965
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.