STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pitx1Paired like homeodomain 1. (312 aa)    
Predicted Functional Partners:
ENSCHAP00000041095
Sorting nexin 16.
      
 0.568
ENSCHAP00000019577
Leucine-rich repeats and transmembrane domains 2a.
    
 
 0.556
ripk2
Receptor interacting serine/threonine kinase 2.
      
 0.541
ENSCHAP00000062707
acetyl-CoA carboxylase beta.
      
 0.532
ENSCHAP00000018237
T-box transcription factor 4.
   
 
 0.524
ENSCHAP00000025324
annotation not available
    
 
 0.459
CTNNB1
Catenin beta 1.
    
 
 0.459
ENSCHAP00000055564
Wingless-type MMTV integration site family, member 5a.
    
 
 0.456
mybl2
MYB proto-oncogene like 2.
   
 
 0.419
mybl1
MYB proto-oncogene like 1.
   
 
 0.419
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.