Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000011820annotation not available (227 aa)    
Predicted Functional Partners:
ENSCHAP00000049610
annotation not available
    
   0.656
ENSCHAP00000058691
NME/NM23 family member 8.
    
   0.656
ENSCHAP00000027391
WD repeat domain 90.
    
   0.582
ldb1
LIM domain binding 1.
    
 0.496
ENSCHAP00000039961
annotation not available
    
 0.496
ENSCHAP00000056531
LIM domain binding 2b.
    
 0.496
ENSCHAP00000062739
Lymphoid enhancer-binding factor 1.
    
 0.480
ENSCHAP00000062201
Folliculogenesis specific bHLH transcription factor.
   
 0.468
hand2
Heart and neural crest derivatives expressed 2.
    
 0.435
LHX3
LIM homeobox 3.
    
  0.413
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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