STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105888742Heat-stable enterotoxin receptor-like. (1098 aa)    
Predicted Functional Partners:
pde6a
Phosphodiesterase 6A.
    
 0.887
pde6b
Phosphodiesterase 6B.
    
 0.887
ENSCHAP00000004769
annotation not available
    
 0.885
ENSCHAP00000003253
annotation not available
    
 0.876
ENSCHAP00000054661
Phosphodiesterase 3B.
    
 0.868
PDE1B
Phosphodiesterase 1B.
     
 0.864
nppc
Natriuretic peptide C.
    
 0.854
ENSCHAP00000047901
Molybdenum cofactor synthesis 1.
  
 
 0.853
ppil6
Peptidylprolyl isomerase like 6.
     
 0.852
nme3
NME/NM23 nucleoside diphosphate kinase 3.
    
 0.844
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.