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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105912802Uncharacterized LOC105912802. (408 aa)    
Predicted Functional Partners:
LOC105906309
Ras-related GTP-binding protein A.
    
 0.986
ENSCHAP00000057305
Interleukin 13 receptor, alpha 2.
  
  
 0.939
ENSCHAP00000000589
Interleukin 11a.
     
 0.886
il10
Interleukin 10.
     
 0.885
ENSCHAP00000016891
annotation not available
   
 
 0.858
LOC105904131
Interleukin-20-like.
     
 0.849
ENSCHAP00000013052
Platelet-derived growth factor beta polypeptide a.
   
 
 0.836
ENSCHAP00000016862
Platelet-derived growth factor beta polypeptide b.
   
 
 0.836
ENSCHAP00000042950
Interleukin 2 receptor, beta.
     
 0.832
ENSCHAP00000032072
Interleukin 6 signal transducer.
   
 
 0.812
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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