STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gapdhGlyceraldehyde-3-phosphate dehydrogenase. (353 aa)    
Predicted Functional Partners:
ENSCHAP00000011344
Triosephosphate isomerase 1b.
 
 0.997
LOC105892014
Triosephosphate isomerase A.
 
 0.997
pgk1
Phosphoglycerate kinase 1.
 
 0.995
ENSCHAP00000026988
glutamyl-prolyl-tRNA synthetase 1.
  
 0.984
ENSCHAP00000043204
Glucose-6-phosphate isomerase b.
  
 
 0.983
h6pd
Hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase.
  
 0.980
LOC105903820
Fructose-bisphosphate aldolase B.
  
 0.965
aldoc
Aldolase, fructose-bisphosphate C.
  
 0.954
bpgm
Bisphosphoglycerate mutase.
  
 0.953
ENSCHAP00000009742
Transaldolase 1.
  
 
 0.950
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.