STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000012025Family with sequence similarity 162 member A. (185 aa)    
Predicted Functional Partners:
LOC105901090
E3 ubiquitin-protein ligase DTX3L-like.
   
 
 0.921
ENSCHAP00000053119
Zgc:66440.
   
 
 0.851
ENSCHAP00000014285
annotation not available
   
 
 0.579
ENSCHAP00000062558
Interferon induced with helicase C domain 1.
   
 
 0.579
hdac11
Histone deacetylase 11.
   
 0.560
ENSCHAP00000000585
Interferon-induced protein 35.
   
  
 0.558
aifm1
Apoptosis inducing factor mitochondria associated 1.
  
 0.549
ENSCHAP00000018573
Poly (ADP-ribose) polymerase family, member 3.
    
 
 0.543
cmpk2
Cytidine/uridine monophosphate kinase 2.
  
  
 0.533
ENSCHAP00000004899
annotation not available
   
 
 0.511
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.