STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000012635T-box transcription factor 5a. (537 aa)    
Predicted Functional Partners:
ENSCHAP00000048127
NK2 homeobox 5.
   
 
 0.935
ENSCHAP00000055703
WW domain containing transcription regulator 1.
    
 0.784
ENSCHAP00000003853
GATA binding protein 4.
   
 0.653
CTNNB1
Catenin beta 1.
    
 0.648
hand2
Heart and neural crest derivatives expressed 2.
   
 0.643
ENSCHAP00000004769
annotation not available
     
 0.612
gata6
GATA binding protein 6.
   
 0.560
ENSCHAP00000021212
Myocyte enhancer factor 2ca.
      
 0.541
gata5
GATA binding protein 5.
   
 0.509
ENSCHAP00000006167
MYC proto-oncogene, bHLH transcription factor a.
    
 0.483
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.