STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
supt4h1SPT4 homolog, DSIF elongation factor subunit. (117 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.999
supt5h
SPT5 homolog, DSIF elongation factor subunit.
    
 0.994
supt16h
SPT16 homolog, facilitates chromatin remodeling subunit.
    
 0.993
ENSCHAP00000046642
SPT6 homolog, histone chaperone and transcription elongation factor.
    
 0.993
rtf1
RTF1 homolog, Paf1/RNA polymerase II complex component.
    
 0.992
ENSCHAP00000052072
Polymerase (RNA) II (DNA directed) polypeptide G-like.
   
 0.991
ENSCHAP00000035435
Polymerase (RNA) II (DNA directed) polypeptide C.
   
 0.989
ENSCHAP00000006037
Polymerase (RNA) II (DNA directed) polypeptide J.
   
 0.988
ENSCHAP00000034363
PAF1 homolog, Paf1/RNA polymerase II complex component.
    
 0.988
ENSCHAP00000037044
Polymerase (RNA) II (DNA directed) polypeptide D.
   
 0.988
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.