STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000013052Platelet-derived growth factor beta polypeptide a. (615 aa)    
Predicted Functional Partners:
ENSCHAP00000046980
annotation not available
   
 0.979
ENSCHAP00000047049
Platelet-derived growth factor receptor, beta polypeptide.
   
 0.979
ENSCHAP00000010756
Platelet-derived growth factor receptor, alpha polypeptide.
   
 0.960
PDGFRB
Platelet derived growth factor receptor beta.
   
 0.952
ENSCHAP00000022623
Kinase insert domain receptor (a type III receptor tyrosine kinase).
   
 0.944
ENSCHAP00000050753
Kinase insert domain receptor like.
   
 0.943
ENSCHAP00000041191
TEK tyrosine kinase, endothelial.
    
 0.941
ENSCHAP00000006669
Fms-related tyrosine kinase 4.
   
 0.934
ENSCHAP00000035307
annotation not available
   
 0.934
LOC105905811
Platelet-derived growth factor subunit A-like.
    
0.924
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.