STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000013070KIT proto-oncogene, receptor tyrosine kinase a. (950 aa)    
Predicted Functional Partners:
ENSCHAP00000049882
Kit ligand a.
   
 0.982
LOC105892101
Growth factor receptor-bound protein 2.
   
 0.945
ENSCHAP00000021557
Interleukin 34.
   
 0.944
nras
NRAS proto-oncogene, GTPase.
    
 0.918
ENSCHAP00000001127
Colony stimulating factor 1b (macrophage).
   
 0.916
ENSCHAP00000057662
annotation not available
   
 0.916
fgf2
Fibroblast growth factor 2.
    
 0.910
fgf7
Fibroblast growth factor 7.
    
 0.909
ENSCHAP00000013052
Platelet-derived growth factor beta polypeptide a.
   
 0.907
ENSCHAP00000046011
Fibroblast growth factor 1a.
   
 0.905
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.