STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000013382SATB homeobox 1b. (868 aa)    
Predicted Functional Partners:
UBL5
Ubiquitin like 5.
    
 0.837
ube2i
Ubiquitin conjugating enzyme E2 I.
    
  0.725
LOC105890774
SUMO-conjugating enzyme UBC9-like.
    
  0.725
casp6
Caspase 6.
    
 0.714
sumo1
Small ubiquitin like modifier 1.
    
 0.685
ENSCHAP00000056547
Activating transcription factor 4a.
    
 0.675
ENSCHAP00000043611
Activating transcription factor 4b.
    
 0.663
ENSCHAP00000010604
annotation not available
    
  0.654
LOC105908591
BTB/POZ domain-containing protein KCTD5-like.
    
  0.654
ENSCHAP00000010783
annotation not available
    
 0.641
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.