STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000013404annotation not available (367 aa)    
Predicted Functional Partners:
sdc4
Syndecan 4.
     
 0.600
svep1
Sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1.
    
  0.592
ENSCHAP00000052398
annotation not available
     
 0.588
ENSCHAP00000029236
CD40 ligand.
    
   0.538
pdk3
Pyruvate dehydrogenase kinase 3.
     
 0.486
ENSCHAP00000019285
Branched chain ketoacid dehydrogenase kinase.
     
 0.486
ENSCHAP00000022696
Pyruvate dehydrogenase kinase, isozyme 2b.
     
 0.486
ENSCHAP00000032676
Pyruvate dehydrogenase kinase, isozyme 4.
     
 0.486
LOC105888906
Pyruvate dehydrogenase (acetyl-transferring) kinase isozyme 2, mitochondrial-like.
     
 0.486
ENSCHAP00000059398
Pyruvate dehydrogenase kinase, isozyme 1.
     
 0.486
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.