STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000013592Armadillo repeat containing 4. (1027 aa)    
Predicted Functional Partners:
efcab1
EF-hand calcium binding domain 1.
  
 0.941
ENSCHAP00000054120
Coiled-coil domain containing 151.
    
 0.931
ENSCHAP00000043394
annotation not available
   
 
 0.871
pacrg
Parkin coregulated.
   
 
 0.859
dnali1
Dynein axonemal light intermediate chain 1.
   
 
 0.853
ENSCHAP00000027391
WD repeat domain 90.
    
   0.849
tekt2
Tektin 2.
   
 
 0.832
efhc2
EF-hand domain containing 2.
   
 
 0.822
efhc1
EF-hand domain containing 1.
   
 
 0.822
ENSCHAP00000034720
Cilia and flagella associated protein 126.
   
   0.805
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.