STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dph1Diphthamide biosynthesis 1. (457 aa)    
Predicted Functional Partners:
dph2
Diphthamide biosynthesis 2.
   
0.999
dph3
Diphthamide biosynthesis 3.
   
 0.998
ENSCHAP00000054310
Diphthamide biosynthesis 5.
   
 0.954
LOC105901172
Elongation factor 2-like.
    
 0.949
eef2
Eukaryotic translation elongation factor 2.
    
 0.949
efl1
Elongation factor like GTPase 1.
    
 0.908
ENSCHAP00000022746
G elongation factor, mitochondrial 1.
    
 0.908
eftud2
Elongation factor Tu GTP binding domain containing 2.
    
 0.908
dimt1
DIMT1 rRNA methyltransferase and ribosome maturation factor.
  
    0.856
elp3
Elongator acetyltransferase complex subunit 3.
   
 
 0.767
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.