STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NKX2-8NK2 homeobox 8. (239 aa)    
Predicted Functional Partners:
LOC105912219
GATA-binding factor 1-B-like.
    
 0.458
ENSCHAP00000003853
GATA binding protein 4.
    
 0.458
gata3
GATA binding protein 3.
    
 0.458
LOC105898893
Erythroid transcription factor-like.
    
 0.458
gata6
GATA binding protein 6.
    
 0.458
ENSCHAP00000047444
GATA binding protein 2a.
    
 0.458
ENSCHAP00000056184
annotation not available
    
 0.458
ENSCHAP00000058706
Trichorhinophalangeal syndrome I.
    
 0.458
gata5
GATA binding protein 5.
    
 0.458
ENSCHAP00000020927
Helicase with zinc finger.
      
 0.445
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.