STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000014431annotation not available (326 aa)    
Predicted Functional Partners:
ENSCHAP00000058145
Si:ch211-195d17.2.
    
 0.875
ENSCHAP00000058207
WD repeat domain 5.
    
  0.824
LOC105889819
Protein max-like.
    
 0.786
MAX
MYC associated factor X.
    
 0.786
ENSCHAP00000043218
annotation not available
    
 0.786
med22
Mediator complex subunit 22.
   
 0.768
med18
Mediator complex subunit 18.
   
 
  0.763
LOC105893216
Transcription initiation factor TFIID subunit 1-like.
   
 
  0.753
RING1
Ring finger protein 1.
    
  0.732
ccnc
Cyclin C.
   
  0.732
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.