STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000014446Angiogenic factor with G patch and FHA domains 1. (637 aa)    
Predicted Functional Partners:
ENSCHAP00000028233
UTP6 small subunit processome component.
   
 0.923
ENSCHAP00000044342
Nucleolar protein 6 (RNA-associated).
   
 0.920
imp3
IMP U3 small nucleolar ribonucleoprotein 3.
    
  0.917
bysl
Bystin like.
    
 0.917
ENSCHAP00000011325
Ribosomal RNA processing 36.
   
  0.914
ENSCHAP00000018854
NOP14 nucleolar protein homolog (yeast).
    
  0.872
ENSCHAP00000025613
annotation not available
    
 0.870
ddx10
DEAD-box helicase 10.
    
 0.853
ENSCHAP00000026317
UTP3 small subunit processome component.
   
   0.814
utp25
UTP25 small subunit processor component.
    
   0.807
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.