STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fam91a1Family with sequence similarity 91 member A1. (834 aa)    
Predicted Functional Partners:
LOC105898690
Chromosome unknown open reading frame, human C17orf75.
    
 
 0.922
ENSCHAP00000042791
WD repeat domain 11.
     
 0.799
ENSCHAP00000007813
Ral GTPase activating protein, alpha subunit 1 (catalytic).
     
 0.688
ENSCHAP00000035035
Ral GTPase activating protein, alpha subunit 2 (catalytic).
     
 0.688
chmp6
Charged multivesicular body protein 6.
    
 
 0.682
LOC105898699
Charged multivesicular body protein 6-like.
    
 
 0.682
LOC105891268
Transitional endoplasmic reticulum ATPase-like.
     
 0.654
SPATA5
Spermatogenesis associated 5.
     
 0.654
LOC105901173
Transitional endoplasmic reticulum ATPase.
     
 0.654
pak4
P21 (RAC1) activated kinase 4.
   
 
  0.648
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.