STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000014746annotation not available (920 aa)    
Predicted Functional Partners:
ENSCHAP00000054339
annotation not available
    
 0.736
ENSCHAP00000003763
Rho guanine nucleotide exchange factor (GEF) 3.
    
 0.732
ENSCHAP00000037516
Rho guanine nucleotide exchange factor (GEF) 3, like.
    
 0.732
ENSCHAP00000011963
Apoptotic peptidase activating factor 1.
   
 0.725
ENSCHAP00000014229
annotation not available
 
     0.715
ENSCHAP00000031122
Polymerase (DNA directed), delta 2, regulatory subunit.
    
 0.715
snrpd2
Small nuclear ribonucleoprotein D2 polypeptide.
    
 0.685
ENSCHAP00000003914
annotation not available
 
      0.672
ENSCHAP00000021246
Translocase of outer mitochondrial membrane 20.
    
  0.672
ENSCHAP00000030862
AT rich interactive domain 4A (RBP1-like).
    
  0.672
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.