STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ammecr1AMMECR nuclear protein 1. (328 aa)    
Predicted Functional Partners:
trappc1
Trafficking protein particle complex 1.
   
 
  0.926
ENSCHAP00000002346
Mediator of cell motility 1.
  
    0.792
ENSCHAP00000008856
annotation not available
  
  
 0.531
naxe
NAD(P)HX epimerase.
  
  
 0.531
ENSCHAP00000025949
YjeF N-terminal domain containing 3.
  
  
 0.531
ENSCHAP00000001921
Nei-like DNA glycosylase 3.
      
 0.525
ENSCHAP00000003078
Protein geranylgeranyltransferase type I, beta subunit.
    
   0.508
ENSCHAP00000046796
annotation not available
   
  
 0.454
ENSCHAP00000003304
A kinase (PRKA) anchor protein 17A.
      
 0.445
ENSCHAP00000026620
SH3 domain binding glutamate-rich protein like.
   
  
 0.428
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.