STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sec11aSEC11 homolog A, signal peptidase complex subunit. (185 aa)    
Predicted Functional Partners:
ENSCHAP00000043413
Signal peptidase complex subunit 2.
   
 0.998
spcs1
Signal peptidase complex subunit 1.
   
 0.997
ENSCHAP00000011804
Signal peptidase complex subunit 3.
   
 0.996
grpr
Gastrin releasing peptide receptor.
     
 0.891
ENSCHAP00000032675
Kaptin (actin binding protein).
    
 0.887
SZT2
SZT2 subunit of KICSTOR complex.
    
 0.880
kti12
KTI12 chromatin associated homolog.
 
   
 0.877
ENSCHAP00000028620
DEP domain containing 5, GATOR1 subcomplex subunit.
    
 0.854
ENSCHAP00000028370
WD repeat domain 24.
    
 0.836
ENSCHAP00000052072
Polymerase (RNA) II (DNA directed) polypeptide G-like.
 
 
    0.836
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.