STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scamp1Secretory carrier membrane protein 1. (343 aa)    
Predicted Functional Partners:
ENSCHAP00000061097
Synergin, gamma.
    
 
 0.527
itm2b
Integral membrane protein 2B.
    
 
 0.516
scamp2
Secretory carrier membrane protein 2.
  
 
  
0.493
ENSCHAP00000003763
Rho guanine nucleotide exchange factor (GEF) 3.
    
 
 0.420
drg2
Developmentally regulated GTP binding protein 2.
   
  
 0.417
ENSCHAP00000055377
Ribosomal protein, large, P1.
      
 0.408
ENSCHAP00000040804
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4.
      
 0.407
ENSCHAP00000016490
Intersectin 2b.
    
 
 0.404
ENSCHAP00000057857
Intersectin 2a.
    
 
 0.404
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.