STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105892007Chromosome unknown open reading frame, human C5orf49. (137 aa)    
Predicted Functional Partners:
ENSCHAP00000043394
annotation not available
    
 
 0.896
ENSCHAP00000029821
Sperm acrosome associated 9.
    
 
 0.828
cfap161
Cilia and flagella associated protein 161.
   
 
 0.826
ENSCHAP00000028636
Enkurin, TRPC channel interacting protein.
    
 
 0.825
LOC105893651
Chromosome unknown open reading frame, human C1orf194.
   
   0.809
ENSCHAP00000034720
Cilia and flagella associated protein 126.
   
   0.800
ENSCHAP00000029087
Cilia and flagella associated protein 77.
   
   0.794
ENSCHAP00000043243
Si:ch211-226m7.4.
   
   0.793
cfap45
Cilia and flagella associated protein 45.
   
   0.787
fam183a
Family with sequence similarity 183 member A.
   
   0.782
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.