STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000015784annotation not available (547 aa)    
Predicted Functional Partners:
ube2g2
Ubiquitin conjugating enzyme E2 G2.
    
 0.730
ENSCHAP00000046650
CCR4-NOT transcription complex, subunit 2.
    
 0.675
CNOT2
CCR4-NOT transcription complex subunit 2.
    
 0.675
LOC105891268
Transitional endoplasmic reticulum ATPase-like.
    
 0.653
SPATA5
Spermatogenesis associated 5.
    
 0.653
LOC105901173
Transitional endoplasmic reticulum ATPase.
    
 0.653
faf1
Fas associated factor 1.
    
 0.649
ENSCHAP00000023163
annotation not available
    
 0.649
faf2
Fas associated factor family member 2.
    
 0.649
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 0.627
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.