STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000015910Ral GEF with PH domain and SH3 binding motif 1. (580 aa)    
Predicted Functional Partners:
LOC105892101
Growth factor receptor-bound protein 2.
   
 0.941
ENSCHAP00000025941
Membrane associated guanylate kinase, WW and PDZ domain containing 3b.
    
 0.800
ENSCHAP00000041671
annotation not available
    
 0.800
ENSCHAP00000051208
annotation not available
    
 0.800
ENSCHAP00000047229
Protein tyrosine phosphatase non-receptor type 6.
    
 0.790
ptpn11
Protein tyrosine phosphatase non-receptor type 11.
    
 0.790
LOC105898973
Tyrosine-protein phosphatase non-receptor type 11-like.
    
 0.790
ENSCHAP00000048910
Leucine-rich repeats and guanylate kinase domain containing.
    
 0.759
grap
GRB2 related adaptor protein.
   
 0.745
ENSCHAP00000007513
GRB2 related adaptor protein 2a.
   
 0.740
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.