STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000015925Peptidylprolyl isomerase (cyclophilin)-like 1. (214 aa)    
Predicted Functional Partners:
cdc5l
Cell division cycle 5 like.
   
 0.999
ENSCHAP00000032669
SYF2 pre-mRNA-splicing factor.
    
 0.999
eftud2
Elongation factor Tu GTP binding domain containing 2.
  
 0.999
snw1
SNW domain containing 1.
    
 0.999
cdc40
Cell division cycle 40.
    
 0.999
snrpg
Small nuclear ribonucleoprotein polypeptide G.
   
 0.997
ENSCHAP00000004762
Aquarius intron-binding spliceosomal factor.
    
 0.997
prpf19
pre-mRNA processing factor 19.
    
 0.997
prpf8
pre-mRNA processing factor 8.
   
 0.997
cwc15
CWC15 spliceosome associated protein homolog.
   
 0.996
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.