STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000015955Tetratricopeptide repeat domain 29. (418 aa)    
Predicted Functional Partners:
ENSCHAP00000001795
Si:dkeyp-81f3.4.
   
    0.763
ENSCHAP00000031098
Coiled-coil domain containing 40.
   
 
 0.733
ENSCHAP00000031879
annotation not available
   
 
 0.733
ENSCHAP00000001232
Guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide a.
   
 0.640
GNAO1
G protein subunit alpha o1.
   
 0.640
ENSCHAP00000011502
annotation not available
   
 0.640
GNAT2
Guanine nucleotide-binding protein G(t) subunit alpha-3-like.
   
 0.640
LOC105899987
Guanine nucleotide-binding protein subunit alpha-13.
   
 0.640
GNAZ
G protein subunit alpha z.
   
 0.640
LOC105888894
Guanine nucleotide-binding protein subunit alpha-13-like.
   
 0.640
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.