STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105911662T-box brain protein 1-like. (667 aa)    
Predicted Functional Partners:
LOC105889396
Forkhead box protein H1-like.
     
 0.558
LOC105894965
Dual specificity mitogen-activated protein kinase kinase 6-like.
   
    0.537
LOC105893604
Dual specificity mitogen-activated protein kinase kinase 6-like.
   
    0.537
ENSCHAP00000001850
T-box transcription factor 19.
   
 
0.523
ENSCHAP00000007346
T-box transcription factor Ta.
   
 
0.523
LOC105910069
Brachyury protein homolog A-like.
   
 
0.523
ENSCHAP00000040470
T-box transcription factor Tb.
   
 
0.523
ENSCHAP00000010165
SMAD family member 2.
   
 0.502
TBX5
T-box transcription factor 5.
   
 
 
0.502
SMAD3
Mothers against decapentaplegic homolog 3-like.
   
 0.502
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.