STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000016276Premelanosome protein b. (661 aa)    
Predicted Functional Partners:
gart
annotation not available
   
  
 0.678
TYRP1
Tyrosinase related protein 1.
   
  
 0.641
LOC105903542
5,6-dihydroxyindole-2-carboxylic acid oxidase-like.
   
  
 0.641
ENSCHAP00000047689
Transmembrane protein 130.
      
 0.598
gch1
GTP cyclohydrolase 1.
   
  
 0.584
ENSCHAP00000016397
Somatolactin alpha.
      
 0.534
myo7a
Myosin VIIA.
      
 0.534
slc24a5
Solute carrier family 24 member 5.
   
  
 0.490
dct
Dopachrome tautomerase.
   
  
 0.443
ADAMTS20
ADAM metallopeptidase with thrombospondin type 1 motif 20.
      
 0.432
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.