STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mon1aMON1 homolog A, secretory trafficking associated. (520 aa)    
Predicted Functional Partners:
ccz1
CCZ1 homolog, vacuolar protein trafficking and biogenesis associated.
    
 0.978
ENSCHAP00000007653
VPS41 subunit of HOPS complex.
    
 
 0.897
rmc1
Regulator of MON1-CCZ1.
    
 0.856
RAB7A
Ras-related protein Rab-7a-like.
    
 0.834
LOC105890731
Ras-related protein Rab-7a-like.
    
 0.834
ENSCHAP00000000041
Armadillo repeat containing 5.
    
 0.827
ENSCHAP00000032071
RAB9B, member RAS oncogene family.
    
 0.827
LOC105902834
Ras-related protein Rab-9A-like.
    
 0.827
RAB9A
RAB9A, member RAS oncogene family.
    
 0.827
ENSCHAP00000012944
Chromogranin A.
    
 0.754
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.